diff --git a/src/android/app/src/main/java/org/citra/citra_emu/features/settings/ui/SettingsFragmentPresenter.kt b/src/android/app/src/main/java/org/citra/citra_emu/features/settings/ui/SettingsFragmentPresenter.kt
index d4f927e35..9810a5e02 100644
--- a/src/android/app/src/main/java/org/citra/citra_emu/features/settings/ui/SettingsFragmentPresenter.kt
+++ b/src/android/app/src/main/java/org/citra/citra_emu/features/settings/ui/SettingsFragmentPresenter.kt
@@ -868,7 +868,7 @@ class SettingsFragmentPresenter(private val fragmentView: SettingsFragmentView)
                     R.string.factor3d,
                     R.string.factor3d_description,
                     0,
-                    100,
+                    255,
                     "%",
                     IntSetting.STEREOSCOPIC_3D_DEPTH.key,
                     IntSetting.STEREOSCOPIC_3D_DEPTH.defaultValue.toFloat()
diff --git a/src/android/app/src/main/jni/default_ini.h b/src/android/app/src/main/jni/default_ini.h
index 3f9c818de..be294ea93 100644
--- a/src/android/app/src/main/jni/default_ini.h
+++ b/src/android/app/src/main/jni/default_ini.h
@@ -162,7 +162,7 @@ bg_green =
 render_3d =
 
 # Change 3D Intensity
-# 0 - 100: Intensity. 0 (default)
+# 0 - 255: Intensity. 0 (default)
 factor_3d =
 
 # The name of the post processing shader to apply.
diff --git a/src/android/app/src/main/res/values/strings.xml b/src/android/app/src/main/res/values/strings.xml
index 8afbc7d7e..572a36422 100644
--- a/src/android/app/src/main/res/values/strings.xml
+++ b/src/android/app/src/main/res/values/strings.xml
@@ -254,7 +254,7 @@
     <string name="stereoscopy">Stereoscopy</string>
     <string name="render3d">Stereoscopic 3D Mode</string>
     <string name="factor3d">Depth</string>
-    <string name="factor3d_description">Specifies the value of the 3D slider. This should be set to higher than 0% when Stereoscopic 3D is enabled.</string>
+    <string name="factor3d_description">Specifies the value of the 3D slider. This should be set to higher than 0% when Stereoscopic 3D is enabled.\nNote: Depth values over 100% are not possible on real hardware and may cause graphical issues</string>
     <string name="cardboard_vr">Cardboard VR</string>
     <string name="cardboard_screen_size">Cardboard Screen Size</string>
     <string name="cardboard_screen_size_description">Scales the screen to a percentage of its original size.</string>
diff --git a/src/citra_qt/citra_qt.cpp b/src/citra_qt/citra_qt.cpp
index 9f0a0ea6b..8dfb2dae7 100644
--- a/src/citra_qt/citra_qt.cpp
+++ b/src/citra_qt/citra_qt.cpp
@@ -836,7 +836,7 @@ void GMainWindow::InitializeHotkeys() {
     });
     connect_shortcut(QStringLiteral("Increase 3D Factor"), [this] {
         const auto factor_3d = Settings::values.factor_3d.GetValue();
-        if (factor_3d < 100) {
+        if (factor_3d < 255) {
             if (factor_3d % FACTOR_3D_STEP != 0) {
                 Settings::values.factor_3d =
                     factor_3d + FACTOR_3D_STEP - (factor_3d % FACTOR_3D_STEP);
diff --git a/src/citra_qt/configuration/configure_enhancements.ui b/src/citra_qt/configuration/configure_enhancements.ui
index a496d35f5..b69676d02 100644
--- a/src/citra_qt/configuration/configure_enhancements.ui
+++ b/src/citra_qt/configuration/configure_enhancements.ui
@@ -276,7 +276,7 @@
            <number>0</number>
           </property>
           <property name="maximum">
-           <number>100</number>
+           <number>255</number>
           </property>
           <property name="value">
            <number>0</number>
@@ -285,6 +285,13 @@
         </item>
        </layout>
       </item>
+      <item>
+       <widget class="QLabel" name="excessive_depth_warning_label">
+        <property name="text">
+         <string>Note: Depth values over 100% are not possible on real hardware and may cause graphical issues</string>
+        </property>
+       </widget>
+      </item>
       <item>
        <layout class="QHBoxLayout" name="horizontalLayout_6">
         <item>
diff --git a/src/core/frontend/emu_window.cpp b/src/core/frontend/emu_window.cpp
index 6c2811cf0..8a979cbdd 100644
--- a/src/core/frontend/emu_window.cpp
+++ b/src/core/frontend/emu_window.cpp
@@ -1,4 +1,4 @@
-// Copyright 2014 Citra Emulator Project
+// Copyright Citra Emulator Project / Azahar Emulator Project
 // Licensed under GPLv2 or any later version
 // Refer to the license.txt file included.
 
@@ -94,17 +94,24 @@ bool EmuWindow::IsWithinTouchscreen(const Layout::FramebufferLayout& layout, uns
 
 std::tuple<unsigned, unsigned> EmuWindow::ClipToTouchScreen(unsigned new_x, unsigned new_y) const {
     Settings::StereoRenderOption render_3d_mode = Settings::values.render_3d.GetValue();
+    bool separate_win = false;
+#ifndef ANDROID
+    separate_win =
+        (Settings::values.layout_option.GetValue() == Settings::LayoutOption::SeparateWindows);
+#endif
 
     if (new_x >= framebuffer_layout.width / 2) {
-        if (render_3d_mode == Settings::StereoRenderOption::SideBySide ||
-            render_3d_mode == Settings::StereoRenderOption::ReverseSideBySide)
+        if ((render_3d_mode == Settings::StereoRenderOption::SideBySide ||
+             render_3d_mode == Settings::StereoRenderOption::ReverseSideBySide) &&
+            !separate_win)
             new_x -= framebuffer_layout.width / 2;
         else if (render_3d_mode == Settings::StereoRenderOption::CardboardVR)
             new_x -=
                 (framebuffer_layout.width / 2) - (framebuffer_layout.cardboard.user_x_shift * 2);
     }
-    if (render_3d_mode == Settings::StereoRenderOption::SideBySide ||
-        render_3d_mode == Settings::StereoRenderOption::ReverseSideBySide) {
+    if ((render_3d_mode == Settings::StereoRenderOption::SideBySide ||
+         render_3d_mode == Settings::StereoRenderOption::ReverseSideBySide) &&
+        !separate_win) {
         new_x = std::max(new_x, framebuffer_layout.bottom_screen.left / 2);
         new_x = std::min(new_x, framebuffer_layout.bottom_screen.right / 2 - 1);
     } else {
@@ -130,21 +137,28 @@ void EmuWindow::CreateTouchState() {
 
 bool EmuWindow::TouchPressed(unsigned framebuffer_x, unsigned framebuffer_y) {
     Settings::StereoRenderOption render_3d_mode = Settings::values.render_3d.GetValue();
+    bool separate_win = false;
+#ifndef ANDROID
+    separate_win =
+        (Settings::values.layout_option.GetValue() == Settings::LayoutOption::SeparateWindows);
+#endif
 
     if (!IsWithinTouchscreen(framebuffer_layout, framebuffer_x, framebuffer_y))
         return false;
 
     if (framebuffer_x >= framebuffer_layout.width / 2) {
-        if (render_3d_mode == Settings::StereoRenderOption::SideBySide ||
-            render_3d_mode == Settings::StereoRenderOption::ReverseSideBySide)
+        if ((render_3d_mode == Settings::StereoRenderOption::SideBySide ||
+             render_3d_mode == Settings::StereoRenderOption::ReverseSideBySide) &&
+            !separate_win)
             framebuffer_x -= framebuffer_layout.width / 2;
         else if (render_3d_mode == Settings::StereoRenderOption::CardboardVR)
             framebuffer_x -=
                 (framebuffer_layout.width / 2) - (framebuffer_layout.cardboard.user_x_shift * 2);
     }
     std::scoped_lock guard(touch_state->mutex);
-    if (render_3d_mode == Settings::StereoRenderOption::SideBySide ||
-        render_3d_mode == Settings::StereoRenderOption::ReverseSideBySide) {
+    if ((render_3d_mode == Settings::StereoRenderOption::SideBySide ||
+         render_3d_mode == Settings::StereoRenderOption::ReverseSideBySide) &&
+        !separate_win) {
         touch_state->touch_x =
             static_cast<float>(framebuffer_x - framebuffer_layout.bottom_screen.left / 2) /
             (framebuffer_layout.bottom_screen.right / 2 -
diff --git a/src/video_core/renderer_opengl/renderer_opengl.cpp b/src/video_core/renderer_opengl/renderer_opengl.cpp
index 07cbd3b23..2d70f51ba 100644
--- a/src/video_core/renderer_opengl/renderer_opengl.cpp
+++ b/src/video_core/renderer_opengl/renderer_opengl.cpp
@@ -793,6 +793,12 @@ void RendererOpenGL::DrawBottomScreen(const Layout::FramebufferLayout& layout,
     const auto orientation = layout.is_rotated ? Layout::DisplayOrientation::Landscape
                                                : Layout::DisplayOrientation::Portrait;
 
+    bool separate_win = false;
+#ifndef ANDROID
+    separate_win =
+        (Settings::values.layout_option.GetValue() == Settings::LayoutOption::SeparateWindows);
+#endif
+
     switch (Settings::values.render_3d.GetValue()) {
     case Settings::StereoRenderOption::Off: {
         DrawSingleScreen(screen_infos[2], bottom_screen_left, bottom_screen_top,
@@ -801,12 +807,17 @@ void RendererOpenGL::DrawBottomScreen(const Layout::FramebufferLayout& layout,
     }
     case Settings::StereoRenderOption::SideBySide: // Bottom screen is identical on both sides
     case Settings::StereoRenderOption::ReverseSideBySide: {
-        DrawSingleScreen(screen_infos[2], bottom_screen_left / 2, bottom_screen_top,
-                         bottom_screen_width / 2, bottom_screen_height, orientation);
-        glUniform1i(uniform_layer, 1);
-        DrawSingleScreen(
-            screen_infos[2], static_cast<float>((bottom_screen_left / 2) + (layout.width / 2)),
-            bottom_screen_top, bottom_screen_width / 2, bottom_screen_height, orientation);
+        if (separate_win) {
+            DrawSingleScreen(screen_infos[2], bottom_screen_left, bottom_screen_top,
+                             bottom_screen_width, bottom_screen_height, orientation);
+        } else {
+            DrawSingleScreen(screen_infos[2], bottom_screen_left / 2, bottom_screen_top,
+                             bottom_screen_width / 2, bottom_screen_height, orientation);
+            glUniform1i(uniform_layer, 1);
+            DrawSingleScreen(
+                screen_infos[2], static_cast<float>((bottom_screen_left / 2) + (layout.width / 2)),
+                bottom_screen_top, bottom_screen_width / 2, bottom_screen_height, orientation);
+        }
         break;
     }
     case Settings::StereoRenderOption::CardboardVR: {
diff --git a/src/video_core/renderer_vulkan/renderer_vulkan.cpp b/src/video_core/renderer_vulkan/renderer_vulkan.cpp
index 6c95a22b7..fb5251892 100644
--- a/src/video_core/renderer_vulkan/renderer_vulkan.cpp
+++ b/src/video_core/renderer_vulkan/renderer_vulkan.cpp
@@ -1,4 +1,4 @@
-// Copyright Citra Emulator Project / Lime3DS Emulator Project
+// Copyright Citra Emulator Project / Azahar Emulator Project
 // Licensed under GPLv2 or any later version
 // Refer to the license.txt file included.
 
@@ -739,6 +739,12 @@ void RendererVulkan::DrawBottomScreen(const Layout::FramebufferLayout& layout,
     const auto orientation = layout.is_rotated ? Layout::DisplayOrientation::Landscape
                                                : Layout::DisplayOrientation::Portrait;
 
+    bool separate_win = false;
+#ifndef ANDROID
+    separate_win =
+        (Settings::values.layout_option.GetValue() == Settings::LayoutOption::SeparateWindows);
+#endif
+
     switch (Settings::values.render_3d.GetValue()) {
     case Settings::StereoRenderOption::Off: {
         DrawSingleScreen(2, bottom_screen_left, bottom_screen_top, bottom_screen_width,
@@ -747,12 +753,17 @@ void RendererVulkan::DrawBottomScreen(const Layout::FramebufferLayout& layout,
     }
     case Settings::StereoRenderOption::SideBySide: // Bottom screen is identical on both sides
     case Settings::StereoRenderOption::ReverseSideBySide: {
-        DrawSingleScreen(2, bottom_screen_left / 2, bottom_screen_top, bottom_screen_width / 2,
-                         bottom_screen_height, orientation);
-        draw_info.layer = 1;
-        DrawSingleScreen(2, static_cast<float>((bottom_screen_left / 2) + (layout.width / 2)),
-                         bottom_screen_top, bottom_screen_width / 2, bottom_screen_height,
-                         orientation);
+        if (separate_win) {
+            DrawSingleScreen(2, bottom_screen_left, bottom_screen_top, bottom_screen_width,
+                             bottom_screen_height, orientation);
+        } else {
+            DrawSingleScreen(2, bottom_screen_left / 2, bottom_screen_top, bottom_screen_width / 2,
+                             bottom_screen_height, orientation);
+            draw_info.layer = 1;
+            DrawSingleScreen(2, static_cast<float>((bottom_screen_left / 2) + (layout.width / 2)),
+                             bottom_screen_top, bottom_screen_width / 2, bottom_screen_height,
+                             orientation);
+        }
         break;
     }
     case Settings::StereoRenderOption::CardboardVR: {
@@ -767,8 +778,13 @@ void RendererVulkan::DrawBottomScreen(const Layout::FramebufferLayout& layout,
     case Settings::StereoRenderOption::Anaglyph:
     case Settings::StereoRenderOption::Interlaced:
     case Settings::StereoRenderOption::ReverseInterlaced: {
-        DrawSingleScreenStereo(2, 2, bottom_screen_left, bottom_screen_top, bottom_screen_width,
-                               bottom_screen_height, orientation);
+        if (separate_win) {
+            DrawSingleScreen(2, bottom_screen_left, bottom_screen_top, bottom_screen_width,
+                             bottom_screen_height, orientation);
+        } else {
+            DrawSingleScreenStereo(2, 2, bottom_screen_left, bottom_screen_top, bottom_screen_width,
+                                   bottom_screen_height, orientation);
+        }
         break;
     }
     }